專長：真菌學，植物真菌互動，植物及土壤微生物相，真菌系統分類，微生物生態學

真菌無所不在，在自然界中不但演化出極高的多樣性，也扮演多樣且重要的生態角色。其中，真菌與植物的共生關係(例如菌根菌、內生真菌)一直是我研究的核心。我的研究主題主要針對植物共生真菌的三個面向：1)群聚生態學，2)演化生物學，3)真菌-植物互動關係。我使用不同的研究工具，從野外觀察，顯微鏡技術，乃至於使用各種omics技術，以瞭解不同植物中真菌在森林或農田中的多樣性及功能。

期刊論文

1. Xie Qiao‐Yi, Kuo Li‐Yaung, Chang Chiung‐Chih, Lin Chien‐Jung, Wang Wen‐Hong, Chen Ko‐Hsuan*, 2024, “Prevalent arbuscular mycorrhizae in roots and highly variable mycobiome in leaves of epiphytic subtropical fern <i>Ophioderma pendulum</i>”, American Journal of Botany, e16319, 1-11. (SCIE) (IF: 3; SCI ranking: 33.5%)
2. Chen Ko-Hsuan, Marcón Florencia, Duringer Jennifer, Blount Ann, Mackowiak Cheryl, Liao Hui-Ling, 2022, “Leaf Mycobiome and Mycotoxin Profile of Warm-Season Grasses Structured by Plant Species, Geography, and Apparent Black-Stroma Fungal Structure”, Applied and Environmental Microbiology, 88(21), e00942-22. (SCIE) (IF: 5.005; SCI ranking: 28.6%,38.4%)
3. Chen Ko-Hsuan, Nelson Jessica, 2022, “A scoping review of bryophyte microbiota: diverse microbial communities in small plant packages”, Journal of Experimental Botany, 73(13), 4496-4513. (SCIE) (IF: 7.378; SCI ranking: 6.3%)
4. Chen Ko‐Hsuan, Liao Hui‐Ling, Arnold A. Elizabeth, Korotkin Hailee B., Wu Steven H., Matheny P. Brandon, Lutzoni François, 2022, “Comparative transcriptomics of fungal endophytes in co‐culture with their moss host <i>Dicranum scoparium</i> reveals fungal trophic lability and moss unchanged to slightly increased growth rates”, New Phytologist, 234(5), 1832-1847. (SCIE) (IF: 10.323; SCI ranking: 3.3%)
5. Chen Ko‐Hsuan, Xie Qiao‐Yi, Chang Chiung‐Chih, Kuo Li‐Yaung, 2022, “Mycobiome detection from a single subterranean gametophyte using metabarcoding techniques”, Applications in Plant Sciences, 10(2). (SCIE) (IF: 2.511; SCI ranking: 44.6%)
6. De Vivo Mattia*, Wang Wen-Hong, Chen Ko-Hsuan*, Huang Jen-Pan, 2021, “First detection of Colletotrichum fructicola (Ascomycota) on horsehair worms (Nematomorpha)”, Biodiversity Data Journal, 9, e72798. (SCIE) (IF: 1.55; SCI ranking: 70.8%)
7. Liao Hui-Ling*, Bonito Gregory, Hameed Khalid, Wu Steven H., Chen Ko-Hsuan, Labbé Jesse, Schadt Christopher W., Tuskan Gerald A., Martin Francis, Kuo Alan, Barry Kerrie, Grigoriev Igor V., Vilgalys Rytas, 2021, “Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi”, Frontiers in Microbiology, 12, 3555. (SCIE) (IF: 6.064; SCI ranking: 24.6%)
8. Chen Ko-Hsuan*, Longley Reid, Bonito Gregory, Liao Hui-Ling, 2021, “A Two-Step PCR Protocol Enabling Flexible Primer Choice and High Sequencing Yield for Illumina MiSeq Meta-Barcoding”, AGRONOMY-BASEL, 11(7), 1274. (SCIE) (IF: 3.949; SCI ranking: 20%,22.9%)
9. Hoeksema Jason D.*, Averill Colin, Bhatnagar Jennifer M., Brzostek Edward, Buscardo Erika, Chen Ko-Hsuan, Liao Hui-Ling, Nagy Laszlo, Policelli Nahuel, Ridgeway Joanna, Rojas J. Alejandro, Vilgalys Rytas, 2020, “Ectomycorrhizal Plant-Fungal Co-invasions as Natural Experiments for Connecting Plant and Fungal Traits to Their Ecosystem Consequences”, Frontiers in Forests and Global Change, 3, 84. (SCIE) (IF: 4.336; SCI ranking: 29.3%,10%)
10. Chen Ko‐Hsuan*, Liao Hui‐Ling, Bellenger Jean‐Philippe, Lutzoni François, 2019, “Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scoparium”, Environmental Microbiology, 21(7), 2273-2289. (SCIE) (IF: 5.476; SCI ranking: 30.4%)
11. Beule Lukas, Chen Ko-Hsuan, Hsu Chih-Ming, Mackowiak Cheryl, Dubeux Jr. Jose C.B., Blount Ann, Liao Hui-Ling*, 2019, “Soil bacterial and fungal communities of six bahiagrass cultivars”, PeerJ, 7 e7014. (SCIE) (IF: 3.061; SCI ranking: 44.6%)
12. Bonito Gregory*, Benucci Gian Maria Niccolò, Hameed Khalid, Weighill Deborah, Jones Piet, Chen Ko-Hsuan, Jacobson Daniel, Schadt Christopher, Vilgalys Rytas, 2019, “Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype”, Frontiers in Microbiology, 10. (SCIE) (IF: 6.064; SCI ranking: 24.6%)
13. Chen Ko-Hsuan, Blount Ann, Justesen Brittany, Walter Joseph H., Wallau Marcelo, Liao Hui-Ling*, 2019, “First Report of the Association of Myriogenospora atramentosa with the Plant Genus Hemarthria”, Plant Health Progress, 20(4), 244-246.