我的研究室以比較胞器及核基因體的方法，探討種子植物的演化課題。過去五年，我們專注於探索松柏(裸子植物)及樟科(被子植物)的胞器及核基因體的多樣性，研究其演化機制。在種子植物親緣演化及基因體學享有聲譽，為該類學門的先驅者。

期刊論文

1. Chung-Shien Wu, Edi Sudianto, Hui-Lung Chiu, Chih-Ping Chao, Shu-Miaw Chaw*, 2021, “Reassessing Banana Phylogeny and Organelle Inheritance Modes Using Genome Skimming Data”, Frontiers in Plant Science, 12, 713216. (SCIE) (IF: 4.402; SCI ranking: 8.1%)
2. Kung-Ping Lin, Shu-Miaw Chaw, Yun-Hua Lo, Teruo Kinjo, Chien-Yi Tung, Hsi-Chi Cheng, Quintin Lau, Yoko Satta, Masako Izawa, Shiang-Fan Chen, Wen-Ya Ko, 2021, “Genetic Differentiation and Demographic Trajectory of the Insular Formosan and Orii’s Flying Foxes”, Journal of Heredity, 112(2), 192-203. (SCIE) (IF: 2.809; SCI ranking: 51.1%,47.1%)
3. Wu Chung-Shien, Sudianto Edi, Chaw Shu-Miaw*, 2021, “Tight Association of Genome Rearrangements With Gene Expression in Conifer Plastomes”, BMC Plant Biology, 21:33, 1-8. (SCIE) (IF: 3.497; SCI ranking: 16.2%)
4. Wu Chung-Shien, Sudianto Edi, Hung Yu-Mei, Wang Bo-Cyun, Huang Chiun-Jr, Chen Chi-Tsong*, Chaw Shu-Miaw*, 2020, “Genome skimming and exploration of DNA barcodes for Taiwan endemic cypresses”, SCIENTIFIC REPORTS, 10(1), 20650. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
5. Lo Yun-Hua, Cheng Hsueh-Chien, Hsiung Chia-Ni, Yang Show-Ling, Wang Han-Yu, Peng Chia-Wei, Chen Chun-Yu, Lin Kung-Ping, Kang Mei-Ling, Chen Chien-Hsiun, Chu Hou-Wei, Lin Chiao-Feng, Lee Mei-Hsuan, Liu Quintin, Satta Yoko, Lin Cheng-Jui, Lin Marie, Chaw Shu-Miaw, Loo Jun-Hun, Shen Chen-Yang, Ko Wen-Ya, 2020, “Detecting Genetic Ancestry and Adaptation in the Taiwanese Han People”, Molecular Biology and Evolution, msaa276. (SCIE) (IF: 11.062; SCI ranking: 6.1%,7.8%,3.9%)
6. Chaw SM, Tai JH, Chen SL, Hsieh CH, Chang SY, Yeh SH, Yang WS, Chen PJ, Wang HY, 2020, “The origin and underlying driving forces of the SARS-CoV-2 outbreak.”, Journal of biomedical science, 27(1), 73. (SCIE) (IF: 5.762; SCI ranking: 24.1%,12.2%)
7. Sudianto E, Wu CS, Chaw SM*, 2020, “The origin and evolution of plastid genome downsizing in Southern Hemispheric cypresses (Cupressaceae)”, Frontiers in Plant Science, 11,901. (SCIE) (IF: 4.402; SCI ranking: 8.1%)
8. Fu CN, Wu CS, Ye LJ, Mo ZQ, Liu J, Chang YW, Li DZ, Chaw SM*, Gao LM*, 2019, “Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide.”, Scientific Reports, 9, 2773. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
9. Chaw SM, Liu YC, Wu YW, Wang HY, Lin CI, Wu CS, Ke HM, Chang LY, Hsu CY, Yang HT, Sudianto E, Hsu MH, Wu KP, Wang LN, Leebens-Mack JH, Tsai IJ, 2019, “Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution.”, Nature plants, 5(1), 63-73. (SCIE) (IF: 13.256; SCI ranking: 1.3%)
10. Sudianto E, Chaw SM*, 2019, “Two Independent Plastid accD Transfers to the Nuclear Genome of Gnetum and Other Insights on Acetyl-CoA Carboxylase Evolution in Gymnosperms.”, Genome biology and evolution, 11(6), 1691-1705. (SCIE) (IF: 3.462; SCI ranking: 35.3%,34.8%)
11. Sudianto E, Wu CS, Leonhard L, Martin WF, Chaw SM*, 2018, “Enlarged and highly repetitive plastome of Lagarostrobos and plastid phylogenomics of Podocarpaceae”, Molecular Phylogenetics and Evolution, 133,24-32. (SCIE) (IF: 3.496; SCI ranking: 33.3%,41.4%,34.3%)
12. Wu CS, Wang TJ, Wu CW, Wang YN, SM Chaw*, 2017, “Plastome Evolution in the Sole Hemiparasitic Genus Laurel Dodder (Cassytha) and Insights into the Plastid Phylogenomics of Lauraceae”, GENOME BIOLOGY AND EVOLUTION, 9(10), 2604-2614. (SCIE) (IF: 3.462; SCI ranking: 35.3%,34.8%)
13. Qu XJ, Wu CS, Chaw SM*, Yi TS*, 2017, “Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae)”(探究柏類亞科的同型異構質體基因組的存在機制), Genome Biology and Evolution, 9(4), 1110–1119. (SCIE) (IF: 3.462; SCI ranking: 35.3%,34.8%)
14. Qu XJ, Jin JJ, Chaw SM, Li DZ*, Yi TS*, 2017, “Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)”, SCIENTIFIC REPORTS, 7, 41005. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
15. Chung-Shien Wu, Shu-Miaw Chaw*, 2016, “Large-Scale Comparative Analysis Reveals the Mechanisms Driving Plastomic Compaction, Reduction, and Inversions in Conifers II (Cupressophytes)”, Genome Biology and Evolution, 8(12), 3740-3750. (SCIE) (IF: 3.462; SCI ranking: 35.3%,34.8%)
16. Hsu CY, Wu CS, Chaw SM*, 2016, “Birth of four chimeric plastid gene clusters in Japanese umbrella pine.”, Genome Biology and Evolution, 8(6), 1776-1784. (SCIE) (IF: 3.462; SCI ranking: 35.3%,34.8%)
17. Sudianto E, Wu CS, Lin CP, Chaw SM*, 2016, “Revisiting the plastid phylogenomics of Pinaceae with two complete plastomes of Pseudolarix and Tsuga.”, Genome Biology and Evolution, 8(6), 1804-1811. (SCIE) (IF: 3.462; SCI ranking: 35.3%,34.8%)

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