生物如何演化去佔據地球上各式各樣的生態區位是相當有趣的問題。為了瞭解這個問題，我們對鳥類（和其他動物）的親緣地理學，適應性演化學，基因體學和行為生態學進行研究。因為鳥類演化出了一系列特殊的形態和行為特徵，所以我們選擇它們為研究對象。同時，誰能不對這些一窗之隔的繽紛飛羽多看一眼。

期刊論文

1. Guo, J.-C., Shaner, P.-J.L.*, Hung, C.-M.*, 2024, “A 3D modelling approach to measuring structural characteristics of bird nest interiors”, Methods in Ecology and Evolution, 00, https://doi.org/10.1111/2041-210X.14448. (SCIE) (IF: 6.6; SCI ranking: 7%)
2. 1.Fang, Y.-T., Kuo, H.-C., Chen, C.-Y., Chou, S.-J., Lu, C.-W. and Hung, C.-M.*, 2024, “Brain gene regulatory networks coordinate nest construction in birds”, MOLECULAR BIOLOGY AND EVOLUTION, 41(7), msae125. (SCIE) (IF: 10.7; SCI ranking: 8.8%,7.5%,5.2%)
3. 2.Kamali, K., Nazarizadeh, M., Fatemizadeh, F., Salmabadi, S., Hung, C.-M.* and Kaboli, M.*, 2024, “Integrating phylogenetic, phylogeographic, and morphometric analyses to reveal cryptic lineages within the genus Asaccus (Reptilia: Squamata: Phyllodactylidae) in Iran”, BMC ZOOLOGY, 9, 12. (SCIE) (IF: 1.6; SCI ranking: 35.6%)
4. Chan, Y.-F., Lu, C.-W., Kuo, H.-C.*, Hung, C.-M.*, 2024, “A chromosome-level genome assembly of the Asian house martin implies potential genes associated with the feathered-foot trait”, G3-GENES GENOMES GENETICS, kae077, kae077. (SCIE) (IF: 2.6; SCI ranking: 58.7%)
5. Chia, S.-Y., Fang, Y.-T., Su, Y.-T., Tsai, P.-Y., Hsieh C., Tsao, S.-H., Juang, J.-Y., Hung, C.-M.*, Tuanmu, M.-N.*, 2023, “A global database of bird nest traits”, SCIENTIFIC DATA, 10, 923. (SCIE) (IF: 8.501; SCI ranking: 16.2%)
6. Lu, C.-W., Huang, S.-T., Cheng, S.-J., Lin, C.-T., Hsu, Y.-C., Yao, C.-T., Dong, F, Hung, C.-M.*, Kuo, H.-C.*, 2023, “Genomic architecture underlying morphological and physiological adaptation to high elevation in a songbird.”, MOLECULAR ECOLOGY, 32, 2234-2251. (SCIE) (IF: 6.622; SCI ranking: 20.9%,10.9%,13.5%)
7. Kuo H.-C., Yao C.-T., Liao B.-Y., Weng M.-P., Dong F., Hsu Y.-C., Hung C.-M.*, 2023, “Weak gene-gene interaction facilitates the evolution of gene expression plasticity.”, BMC BIOLOGY, 21, 57. (SCIE) (IF: 7.364; SCI ranking: 10.6%)
8. Ku, Y.-C., Chen, Y.-C., Hung, C.-M., & Ng, C.- S.*, 2023, “The genetic variation of a mitochondrial and two behaviour‐related genes in invasive African Sacred Ibis (Threskiornis aethiopicus) populations in Taiwan.”, IBIS, 165, 647-662. (SCIE) (IF: 2.351; SCI ranking: 12.9%)
9. Guo, J.-C., Tsai, J.-S., Wang, J.-S., Lin, Y.-W., Shaner, P.-J.* & Hung, C.-M.*, 2022, “The role of a synanthropic bird in the nest niche expansion of a secondary cavity nester to man-made structures.”, Ecology & Evolution, 12, e9188. (SCIE) (IF: 3.167; SCI ranking: 43.1%,51.9%)
10. Hung, C.-M. †, Tsao, S.-H. †, Chiang, P.-L., Wu, S.-P., Tuanmu M.-N.* & Juang, J.-Y.*, 2022, “Functional connections between bird eggshell stiffness and nest characteristics through risk of egg collision in nests.”, ECOLOGY LETTERS, 25, 1421-1431, († equal contributor. (SCIE) (IF: 11.274; SCI ranking: 3.4%)
11. Lu, C.-W., Yao, C.-T., & Hung, C.-M.*, 2022, “Domestication obscures genomic estimates of population history”, MOLECULAR ECOLOGY, 31, 752-766. (SCIE) (IF: 6.622; SCI ranking: 20.9%,10.9%,13.5%)
12. Fang, Y.-T., Yao, C.-T., Hsu, Y.-C. & Hung, C.-M.*, 2022, “Elevational plumage divergence in the Rufous-capped Babbler on a mountainous island”, IBIS, 164, 151-167. (SCIE) (IF: 2.351; SCI ranking: 12.9%)
13. Wang, J.-S., Tuanmu, M.-N., Hung, C.-M.*, 2021, “Effects of artificial light at night on the nest-site selection, reproductive success and behavior of a synanthropic bird”, ENVIRONMENTAL POLLUTION, 288, 117805. (SCIE) (IF: 9.988; SCI ranking: 10%)
14. Dong, F., Kuo, H.-C., Chen, G.-L., Wu, F., Shan, P.-F., Wang, J., Chen, D., Lei, F.-M., Hung, C.-M.*, Liu, Y.*, Yang, X.-J.*, 2021, “Population genomic, climatic and anthropogenic evidence suggest the role of human forces in endangerment of green peafowl (Pavo muticus)”, PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 288, 20210073. (SCIE) (IF: 5.531; SCI ranking: 20.2%,17.2%,17.3%)
15. Dong, F., Hung, C.-M., Li, S.H., Yang X.-J., 2021, “Potential Himalayan community turnover through the Late Pleistocene”, CLIMATIC CHANGE, 164(1-2), 6. (SCIE) (IF: 5.174; SCI ranking: 31.5%,24.5%)
16. Chen, Yu-Chi, Kuo, Hao-Chih, Lo, Wen-Sui & Hung, Chih-Ming*, 2020, “Avian phenotypic convergence is subject to low genetic constraints based on genomic evidence”, BMC EVOLUTIONARY BIOLOGY, 20, 147. (SCIE) (IF: 3.438; SCI ranking: 46.2%,49.7%)
17. Chen, C.-Y., Chen, C.-K., Chen, Y.-Y., Fang, A., Shaw, G.T.-W., Hung, C.-M.* & Wang, D.*, 2020, “Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests”, MICROBIOME, 8, 129. (SCIE) (IF: 16.837; SCI ranking: 6.5%)
18. Feng Dong, Chih-Ming Hung*, Xiao-Jun Yang*, 2020, “Secondary contact after allopatric divergence explains avian speciation and T high species diversity in the Himalayan-Hengduan Mountains”, MOLECULAR PHYLOGENETICS AND EVOLUTION, 143, 106671. (SCIE) (IF: 5.019; SCI ranking: 36.7%,21.2%,21.5%)
19. Nguyen, H. N., Hung, C. M., Yang, M. Y., & Lin, S. M.*, 2020, “Sympatric competitors have driven the evolution of temporal activity patterns in Cnemaspis geckos in Southeast Asia”, SCIENTIFIC REPORTS, 10, 27. (SCIE) (IF: 4.997; SCI ranking: 25.7%)
20. Huang, C.-C., Chen, Y.-Y., Fang, Y.-T., Chen, Y.-C. and Hung, C.-M.*, 2019, “Generating brain matrices for zebra finch brain sectioning using three-dimensional printing technology”, JOURNAL OF NEUROSCIENCE METHODS, 327, 108399. (SCIE) (IF: 2.987; SCI ranking: 62%,71.3%)
21. Yang, S.-F., Lu, C.-W., Yao, C.-T. and Hung, C.-M.*, 2019, “To Trim or Not to Trim: Effects of Read Trimming on the De Novo Genome Assembly of a Widespread East Asian Passerine, the Rufous-Capped Babbler (Cyanoderma ruficeps Blyth)”, GENES, 10(10), 737. (SCIE) (IF: 4.141; SCI ranking: 40.7%)
22. Yu-Chi Chen, Masoud Nazarizadeh, Fu-Min Lei, Xiao-Jun Yang, Cheng-Te Yao, Feng Dong, Lu Dong, Fa-Sheng Zou, Sergei V. Drovetski, Yang Liu, Chun-Cheng Huang & Chih-Ming Hung*, 2019, “The niches of nuthatches affect their lineage evolution differently across latitude”, MOLECULAR ECOLOGY, 28(4), 803-817. (SCIE) (IF: 6.622; SCI ranking: 20.9%,10.9%,13.5%)
23. Hung N. Nguyen, Chia-Wei Lu, Jui-Hua Chu, Larry L. Grismer, Chih-Ming Hung* and Si-Min Lin*, 2019, “Historical demography of four gecko species specializing in boulder cave habitat – its implications in the evolutionary dead end hypothesis and conservation”, MOLECULAR ECOLOGY, 28(4), 772-784. (SCIE) (IF: 6.622; SCI ranking: 20.9%,10.9%,13.5%)
24. Lai, Y.T., Yeung, C.K., Omland, K.E., Pang, E.L., Hao, Y., Liao, B.Y., Cao, H.F., Zhang B.W. Yeh, C.F., Hung, C.M., Hung H.Y., Yang, M.Y., Liang W., Hsu, Y.C. Yao, C.T., Dong, L., Lin, K. & Li, S.H.*, 2019, “Standing genetic variation as the predominant source for adaptation of a songbird.”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(6), 2152-2157. (SCIE) (IF: 12.779; SCI ranking: 12.2%)
25. Jhih-Syuan Wang & Chih-Ming Hung*, 2019, “Barn Swallow Nest Predation by a Recent Urban Invader, the Taiwan Whistling Thrush – Implications for the Evolution of Urban Avian Communities”, ZOOLOGICAL STUDIES, 58, 1. (SCIE) (IF: 1.904; SCI ranking: 35%)