研究領域

• 珊瑚與珊瑚礁演化
• 珊瑚礁生態與環境變遷
• 共生學

期刊論文

1. Lauriane Ribas-Deulofeu, Vianney Denis, Pierre-Alexandre Château, Chaolun Allen Chen​*, 2021, “Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan)”, PEERJ, 9, e11744. (SCIE) (IF: 2.379; SCI ranking: 45.1%)
2. Parisa Alidoost Salimi, Pargol Ghavam Mostafavi, Chaolun Allen Chen, Michel Pichon & Mahsa Alidoost Salimi, 2021, “Molecular phylogeny of some coral species from the Persian Gulf”, MOLECULAR BIOLOGY REPORTS, 48, 2993-2999. (SCIE) (IF: 1.402; SCI ranking: 88.9%)
3. Ashley H Y Bang, Chao-Yang Kuo, Colin Kuo-Chang Wen, Khah-Leng Cherh, Ming-Jay Ho, Nien-Yun Cheng, Yen-Chia Chen and Chaolun Allen Chen*, 2021, “Corrigendum: Quantifying Coral Reef Resilience to Climate Change and Human Development: An Evaluation of Multiple Empirical Frameworks”, Frontiers in Marine Science-Coral Reef Research, 8:653404, 653404. (SCIE) (IF: 　; 　)
4. Ming-Jay HO, Chao-Yang KUO, Hung-Yi WU, Ming-Shiou JENG, Shiahn-Wern SHYUE*, Chaolun Allen CHEN*, 2020, “Fishing pressure occurs down to the lower mesophotic coral ecosystem in Lyudao, Taiwan”, Galaxea, Journal of Coral Reef Studies, 22(1), 29-30.
5. Shashank Keshavmurthy, Chao-Yang Kuo, Ya-Yi Huang, Rodrigo Carballo-Bolaños, Pei-Jei Meng*, Jih-Terng Wang* and Chaolun Allen Chen*, 2020, “Correction: Keshavmurthy, S., et al. Coral Reef Resilience in Taiwan: Lessons from Long-Term Ecological Research on the Coral Reefs of Kenting National Park (Taiwan). Journal of Marine Science and Engineering 2019, 7, 338”, Journal of Marine Science and Engineering, 8(12), 964. (SCIE) (IF: 2.033; SCI ranking: 47.8%)
6. Shashank Keshavmurthy*, Morgan Beals, Hernyi Justin Hsieh, Kwang-Sik Choi, Chaolun Allen Chen*, 2020, “Physiological plasticity of corals to temperature stress in marginal coral communities”, Science of The Total Environment, 758, 143628. (SCIE) (IF: 6.551; SCI ranking: 8.3%)
7. Juliet Furaha Karisa, David Obare Obura, Chaolun Allen Chen*, 2020, “Spatial heterogeneity of coral reef benthic communities in Kenya”, PLOS ONE, 15(8), e0237397. (SCIE) (IF: 2.74; SCI ranking: 38%)
8. Chao-Yang Kuo, Shashank Keshavmurthy, Aichi Chung, Ya-Yi Huang, Sung-Yin Yang, Yei-Chia Chen & Chaolun Allen Chen*, 2020, “Demographic census confirms a stable population of the critically-endangered caryophyllid coral Polycyathus chaishanensis (Scleractinia; Caryophyllidae) in the Datan Algal Reef, Taiwan”, SCIENTIFIC REPORTS, 10, 10585. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
9. Ya-Yi Huang, Rodrigo Carballo-Bolaños, Chao-Yang Kuo, Shashank Keshavmurthy & Chaolun A. Chen*, 2020, “Leptoria phrygia in Southern Taiwan shuffles and switches symbionts to resist thermal-induced bleaching”, SCIENTIFIC REPORTS, 10(1), 7808. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
10. Shashank Keshavmurthy​, Hwee Sze Tee​, Kuo-Wei Kao, Jih-Terng Wang​*, Chaolun Allen Chen​*, 2020, “Specificity trumps flexibility—location-based stable associations between Symbiodiniaceae genera and Platygyra verweyi (Scleractinia; Merulinidae)”, PEERJ, 8:e8791. (SCIE) (IF: 2.379; SCI ranking: 45.1%)
11. Ji Hyoun Kang, Ji Eun Jang, Jae Hwan Kim, Sangil Kim, Shashank Keshavmurthy, Sylvain Agostini, James D. Reimer, Chaolun Allen Chen, Kwang-Sik Choi, Sang Rul Park and Hyuk Je Lee*, 2020, “The Origin of the Subtropical Coral Alveopora japonica (Scleractinia: Acroporidae) in High-Latitude Environments”, FRONTIERS IN ECOLOGY AND EVOLUTION, 8, 12. (SCIE) (IF: 2.416; SCI ranking: 41.4%)
12. Rodrigo Carballo-Bolaños*, Derek Soto* and Chaolun Allen Chen*, 2019, “Thermal Stress and Resilience of Corals in a Climate-Changing World”, Journal of Marine Science and Engineering, 8(1), 15. (SCIE) (IF: 2.033; SCI ranking: 47.8%)
13. Shashank Keshavmurthy, Chao-Yang Kuo, Ya-Yi Huang, Rodrigo Carballo-Bolaños, Pei-Jei Meng*, Jih-Terng Wang*, and Chaolun Allen Chen*, 2019, “Coral Reef Resilience in Taiwan: Lessons from Long-Term Ecological Research on the Coral Reefs of Kenting National Park (Taiwan)”, Journal of Marine Science and Engineering, 7(11), 388. (SCIE) (IF: 2.033; SCI ranking: 47.8%)
14. Emily S. Darling, Tim R. McClanahan, […], Chaolun Allen Chen,[…],David Mouillot , 2019, “Social–environmental drivers inform strategic management of coral reefs in the Anthropocene”, NATURE ECOLOGY & EVOLUTION, 3(9), 1341-1350. (SCIE) (IF: 12.543; SCI ranking: 1.8%,5.9%)
15. Jih-Terng Wang*, Yu-Ting Wang, Shashank Keshavmurthy, Pei-Jei Meng, Chaolun Allen Chen*, 2019, “The coral Platygyra verweyi exhibits local adaptation to long-term thermal stress 2 through host-specific physiological and enzymatic response”, Scientific Reports, 9, 13492. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
16. Chao-Yang KUO, Aichi CHUNG, Shashank KESHAVMURTHY, Ya-Yi HUANG, Sung-Yin YANG, and Chaolun Allen CHEN*, 2019, “Lonely giant on the sand: unexpected massive Taiwanese coral, Polycyathus chaishanensis in the Datan algal reef demands a conservation focus”, Galaxea, Journal of Coral Reef Studies, 21(1), 11-12.
17. Rodrigo Carballo-Bolaños, Vianney Denis, Ya-Yi Huang, Shashank Keshavmurthy, Chaolun Allen Chen*, 2019, “Temporal variation and photochemical efficiency of species in Symbiodinaceae associated with coral Leptoria phrygia (Scleractinia; Merulinidae) exposed to contrasting temperature regimes”, PLOS ONE, 14(6): e0218801. (SCIE) (IF: 2.74; SCI ranking: 38%)
18. Carolin Nieder, Chen-Pan Liao, Chaolun Allen Chen, Shao-Lun Liu*, 2019, “Filamentous calcareous alga provides substrate for coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll, Taiwan”, PLOS ONE, 14(5): e0200864. (SCIE) (IF: 2.74; SCI ranking: 38%)
19. Ren Min Oh1*, Mei Lin Neo, Nicholas Wei Liang Yap, Sudhanshi Sanjeev Jain, Ria Tan, Chaolun Allen Chen & Danwei Huang, 2019, “Citizen science meets integrated taxonomy to uncover the diversity and distribution of Corallimorpharia in Singapore”, RAFFLES BULLETIN OF ZOOLOGY, 67, 306–321. (SCIE) (IF: 0.907; SCI ranking: 64.5%)
20. Carolin Nieder, Pin-Chen Chen, Chen, Chaolun Allen Chen, Shao-Lun Liu*, 2019, “New record of the encrusting alga Ramicrusta textilis overgrowing corals in the lagoon of Dongsha Atoll, South China Sea”, Bulletin of Marine Science, 95(3), 459-462. (SCIE) (IF: 1.432; SCI ranking: 51.4%,65.7%)
21. Shashank Keshavmurthy, Sung-Yin Yang, Chun-Yu Su, Yu-Wen Chiu, Chaolun Allen Chen*, 2019, “Association between massive Porites and the hidden hermit crab, Calcinus latens (Decapoda, Diogenidae)”, BULLETIN OF MARINE SCIENCE, 95(1), 115-116. (SCIE) (IF: 1.432; SCI ranking: 51.4%,65.7%)
22. Parisa Alidoost Salimi, Pargol Ghavam Mostafavi*, Chaolun Allen Chen, Seyed Mohammad Reza Fatemi, and Michel Pichon, 2018, “The Scleractinia (Cnidaria: Anthozoa) of Abu-Musa and Sirri Islands, Persian Gulf”, ZOOLOGICAL STUDIES, 57, 56. (SCIE) (IF: 1.257; SCI ranking: 46.2%)
23. Kuo-Wei Kao, Shashank Keshavmurthy*, Cing-Hsin Tsao, Jih-Terng Wang, and Chaolun Allen Chen*, 2018, “Repeated and Prolonged Temperature Anomalies Negate Symbiodiniaceae Genera Shuffling in the Coral Platygyra verweyi (Scleractinia; Merulinidae)”, ZOOLOGICAL STUDIES, 57, 55. (SCIE) (IF: 1.257; SCI ranking: 46.2%)
24. Hawthorne L. Beyer, Emma V. Kennedy, Maria Beger, Chaolun Allen Chen, Joshua E. Cinner, Emily S. Darling, C. Mark Eakin, Ruth D. Gates, Scott F. Heron, Nancy Knowlton, David O. Obura, Stephen R. Palumbi, Hugh P. Possingham, Marji Puotinen, Rebecca K. Runting, William J. Skirving, Mark Spalding, Kerrie A. Wilson,Sally Wood, John E. Veron, Ove Hoegh‐Guldberg, 2018, “Risk‐sensitive planning for conserving coral reefs under rapid climate change”, Conservation Letters, 11(6),e12587. (SCIE) (IF: 6.766; SCI ranking: 3.4%)
25. Stephane De Palmas, Derk R. Sato, Min-Jay Ho, Vianney Denis*, Chaolun Allen Chen* , 2018, “Molecular assessment of Pocillopora verrucosa (Scleractinia; Pocilloporidae) distribution along a depth gradient in Ludao, Taiwan. ”, PeerJ, 6, e5797. (SCIE) (IF: 2.379; SCI ranking: 45.1%)
26. Sung-Yin Yang, Hsing-Ju Chen, Ming-Jay Ho, Yen-Jia Chen, Ya-Yi Huang, Wenhua Savanna Chow, Sen-Lin Tang, Ming-Shiou Jeng, Chaolun Allen Chen*, 2018, “Outbreak of coral-killing cyanobacteriasponge, Terpios hoshinota, in Taiping Island (Itu Aba), Spratlys, South China Sea”, BULLETIN OF MARINE SCIENCE, 94(4), 1543-1544. (SCIE) (IF: 1.432; SCI ranking: 51.4%,65.7%)
27. Derek Soto, Stephane De Palmas, Ming Jay Ho, Vianney Denis*, Chaolun Allen Chen*, 2018, “Spatial variation in the morphological traits of Pocillopora verrucosa along a depth gradient in Taiwan”, PLoS One, 13(8), e0202586. (SCIE) (IF: 2.74; SCI ranking: 38%)
28. Sung-Yin Yang, Wai-Ling Fong, Wenhua Savanna Chow, Chia-Min Hsu, Chia-Ling Carynn Chan, Shashank Keshavmurthy*, Chaolun Allen Chen*, 2018, “Development of Novel Polymorphic Microsatellite Markers in Catch Bowl Coral, Isopora palifera (Scleractinia; Acroporidae) Using Next-generation Sequencing”, ZOOLOGICAL STUDIES, 57, 32. (SCIE) (IF: 1.257; SCI ranking: 46.2%)
29. Carolin Nieder, Chaolun Allen Chen, Shao-Lun Liu*, 2018, “Long-term blooming filamentous calcareous alga provides substrate for other coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll (Pratas), Taiwan”, bioRxiv, doi: 10.1101/363796.
30. Maria Dornelas*, Laura H. Antão, Faye Moyes, Amanda E. Bates, Anne E. Magurran, Dušan Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Haley Arnold, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Miguel Barbosa, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti‐Cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho,Edward Castañeda‐Moya, Chaolun Allen Chen, ...etc., 2018, “BioTIME: A database of biodiversity time series for the Anthropocene”, GLOBAL ECOLOGY AND BIOGEOGRAPHY, 27(7), 760-786. (SCIE) (IF: 6.446; SCI ranking: 6.5%,4%)
31. Sonny T. M. Lee, Shashank Keshavmurthy*, Silvia Fontana, Mezaki Takuma, Wen-Hua Chou and Chaolun Allen Chen*, 2018, “Transcriptomic response in Acropora muricata under acute temperature stress follows preconditioned seasonal temperature fluctuations.”, BMC research notes, 11(1), 119.
32. Katrina S. Luzon*, Mei-Fang Lin*, Ma. Carmen A. Ablan Lagman, Wilfredo Roehl Y. Licuanan and Chaolun Allen Chen*, 2017, “Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphyllidae; clade V)”, PeerJ, 5, e4074. (SCIE) (IF: 2.379; SCI ranking: 45.1%)
33. Jia-Ho Shiu, Shashank Keshavmurthy, Pei-Wen Chiang, Hsing-Ju Chen, Shueh-Ping Lou, Ching-Hung Tseng, Hernyi Justin Hsieh, Chaolun Allen Chen & Sen-Lin Tang*, 2017, “Dynamics of coral-associated bacterial communities acclimated to temperature stress based on recent thermal history”, SCIENTIFIC REPORTS, 7(1), 14933. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
34. Jih-Terng Wang​*, Shashank Keshavmurthy, Tzu-Ying Chu, Chaolun Allen Chen​*, 2017, “Diverse responses of Symbiodinium types to menthol and DCMU treatment”, PeerJ, 5, e3843. (SCIE) (IF: 2.379; SCI ranking: 45.1%)
35. Ching-Yu Liou, Sung-Yin Yang*, Chaolun Allen Chen*, 2017, “Unprecedented calcareous algal reefs in northern Taiwan merit high conservation priority”, CORAL REEFS, 36(4), 1253. (SCIE) (IF: 3.536; SCI ranking: 8.4%)
36. Vianney Denis*, Lauriane Ribas-Deulofeu, Nicolas Sturaro, Chao-Yang Kuo & Chaolun Allen Chen, 2017, “A functional approach to the structural complexity of coral assemblages based on colony morphological features”, SCIENTIFIC REPORTS, 7(1), 9849. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
37. Yang S-H, Tseng C-H, Huang C-R, Chen C-P, Tandon K, Lee STM, Chiang P-W, Shiu J-H, Chen CA and Tang S-L, 2017, “Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals”, Frontiers in Microbiology, 8, 1094. (SCIE) (IF: 4.236; SCI ranking: 25%)
38. James Davis Reimer, Maria Eduarda Alves Santos, Hiroki Kise, Mei Lin Neo, Chaolun Allen Chen, Keryea Soong, 2017, “Diversity of Zoantharia (Anthozoa: Hexacorallia) at Dongsha Atoll in the South China Sea”, Regional Studies in Marine Science, 12, 49-57. (SCIE) (IF: 1.183; SCI ranking: 62.6%,76.9%)
39. Yaoyang Chuang, Marcelo Kitahara, Hironobu Fukami, Dianne Tracey, David J. Miller*, Chaolun Allen Chen*, 2017, “Loss and Gain of Group I Introns in the Mitochondrial Cox1 Gene of the Scleractinia (Cnidaria; Anthozoa)”, ZOOLOGICAL STUDIES, 56, 9. (SCIE) (IF: 1.257; SCI ranking: 46.2%)
40. Shashank Keshavmurthy, Kuo-Hsun Tang, Chao-Yang Kuo, Keryea Soong, Chaolun Allen Chen*, 2017, “Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan in the South China Sea”, PeerJ, 5, e2871. (SCIE) (IF: 2.379; SCI ranking: 45.1%)
41. Mei-Fang Lin, Aurelie Moya, Hua Ying, Chaolun Allen Chen, Ira Cooke, Eldon E. Ball, Sylvain Forêt, David J. Miller, 2017, “Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals)”, Genome Biology and Evolution, 9(1),150-160. (SCIE) (IF: 3.462; SCI ranking: 35.3%,34.8%)
42. Roberto Arrigoni, Michael L Berumen, Chaolun Allen Chen, Tullia I Terraneo, Andrew H Baird, Claude Payri, Francesca Benzoni, 2016, “Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species”, MOLECULAR PHYLOGENETICS AND EVOLUTION, 105, 146-159. (SCIE) (IF: 3.496; SCI ranking: 33.3%,41.4%,34.3%)
43. Mei Fang Lin, Wen Hwa Chou, Marcelo V Kitahara, Chao Lun Allen Chen, David John Miller, Sylvain Foret​, 2016, “Corallimorpharians are not “naked corals”: insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses”, PeerJ, 4, e2463. (SCIE) (IF: 2.379; SCI ranking: 45.1%)
44. Roberto Arrigoni*, Francesca Benzoni*, Danwei Huang, Hironobu Fukami, Chaolun Allen Chen, Michael L. Berumen, Mia Hoogenboom, Damian P. Thomson, Bert W. Hoeksema, Ann F. Budd, Yuna Zayasu, Tullia I. Terraneo, Yuko F. Kitano, Andrew H. Baird, 2016, “When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus”, CONTRIBUTIONS TO ZOOLOGY, 85(4), 387-422. (SCIE) (IF: 1.242; SCI ranking: 47.9%)
45. H. J. Hsieh, C. K-C. Wen, Y.-C. Huang, K.-S. Chen, C.-F. Dai, C. A. Chen*, 2016, “Spatial patterns and environmental settings of non-reefal coral communities across the Tropics of Cancer in the Penghu Archipelago (Pescadores), Taiwan”, ZOOLOGICAL STUDIES, doi:10.6620/ZS.2016.55-45. (SCIE) (IF: 1.257; SCI ranking: 46.2%)
46. S.-T. Hsiao, S.-C. Chuang, K.-S. Chen, P.-H. Ho, C.-L. Wu, C. A. Chen*, 2016, “DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida; Ostreidae), not C. gigas”, Scientific Reports, 6, 34057. (SCIE) (IF: 3.998; SCI ranking: 23.9%)
47. L. R. Deulofeu, V. Denis, S. De Palmas, C.-Y. Kuo, H. J. Hsieh, C. A. Chen*, 2016, “Structure of benthic communities along the Taiwan latitudinal gradient”, PLoS One, 11(8), e0160601. (SCIE) (IF: 2.74; SCI ranking: 38%)
48. Christophe Vieira, Shashank Keshavmurthy, Se-Jong Ju, Kiseong Hyeong, Inah Seo, Chang-Keun Kang, Hyun-Ki Hong, Chaolun Allen Chen and Kwang-Sik Choi, 2016, “Population dynamics of a high-latitude coral Alveopora japonica Eguchi from Jeju Island, off the southern coast of Korea”, MARINE AND FRESHWATER RESEARCH, 67, 594-604. (SCIE) (IF: 1.488; SCI ranking: 50%,49.1%,48.6%,61.2%)
49. Wen-Ming Chen, Li-Ping Liu, Chaolun Allen Chen, Jih-Terng Wang, Shih-Yi Sheu, 2016, “Thalassotalea montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata.”, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 66, 4077-4084. (SCIE) (IF: 2.415; SCI ranking: 63.2%)
50. G. Suzuki, S. Keshavmurthy, T. Hayashibara, C. C. Wallace, Y. Shirayama, C. A. Chen, H. Fukami, 2016, “Genetic evidence of peripheral isolation and low diversity in marginal populations of the Acropora hyacinthus complex”, CORAL REEFS, 35(4), 1419-1432. (SCIE) (IF: 3.536; SCI ranking: 8.4%)
51. M.-J. Ho, C.-M. Hsu, C. A. Chen*, 2016, “Wall of orange cup coral, Tubastraea coccinea, at the inlet breakwaters of a nuclear power plant, southern Taiwan”, Marine Biodiversity, DOI: 10.1007/s12526-016-0469-2. (SCIE) (IF: 1.487; SCI ranking: 63.8%,49.5%)
52. D. Huang, B. W. Hoeksema, A. Yang Amri, P. O. Ang, C. A. Chen, H. Huang, D. J. W. Lane, W. Y. Licuanan, Ouk Vibol, S. T. Vo, T. Yeemin, L. M. Chou, 2016, “ Conservation of reef corals in the South China Sea based on species and evolutionary diversity”, BIOLOGICAL CONSERVATION, 25(2), 331-344. (SCIE) (IF: 4.711; SCI ranking: 10.3%,12.4%,18.5%)

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