研究領域

• 珊瑚與珊瑚礁演化
• 珊瑚礁生態與環境變遷
• 共生學

期刊論文

1. Po-Cheng Hsu, Chung-Yen Lin, Ping-Heng Hsieh, Wei-Hsuan Chuang, Mei-Yeh Lu, Chaolun Allen Chen & Shu-Hwa Chen, 2025, “Chromosome-Level Genome Assembly and Annotation of the Japanese Cutlassfish (Trichiurus japonicus): A High-Quality Genomic Resource Featuring Nuclear and Mitochondrial Completeness for Future Studies”, SCIENTIFIC DATA, 12, 1860 (2025), 12, 1860 (2025)-12, 1860 (2025). (SCIE) (IF: 5.8; SCI ranking: 18.1%)
2. Tsung-Han Liu, Chan-Yuan David Lee, Chih-Wei Tu, Po-Hsiung Lin, Chaolun Allen Chen, Ming-Shiou Jeng & Chia-Ying Ko*, 2025, “Shaping hatchling fitness through maternal and environmental influences in green sea turtles”, SCIENTIFIC REPORTS, 15, 20268-20268. (SCIE) (IF: 3.8; SCI ranking: 29.2%)
3. Maria Dornelas, Laura H. Antão, Amanda E. Bates, Viviana Brambilla, Jonathan M. Chase, Cher F. Y. Chow, Ada Fontrodona-Eslava, Anne E. Magurran, Inês S. Martins, Faye Moyes, Alban Sagouis, ...etc., Chaolun Allen Chen, ...etc.,, 2025, “BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series”, GLOBAL ECOLOGY AND BIOGEOGRAPHY, 34(5), e70003, 34(5), e70003-34(5), e70003. (SCIE) (IF: 6.3; SCI ranking: 7%,6.1%)
4. Tsung-Han Liu, Ming-Shiou Jeng, Chan-Yuan David Lee, Chih-Wei Tu, Po-Hsiung Lin, Chaolun Allen Chen, Chia-Ying Ko*, 2025, “Monsoon dynamics shape spatiotemporal patterns in green sea turtle nesting on an island-based habitat”, GLOBAL ECOLOGY AND CONSERVATION, 60(2025), e03600-e03600. (SCIE) (IF: 3.5; SCI ranking: 20.3%,26.3%)
5. Savanna Wenhua Chow, Chih-Hsun Chen, Du-Yang Tsai, Takuma Mezaki, Satoshi Kubota, Hernyi Justin Hsieh, Shashank Keshavmurthy* & Chaolun Allen Chen*, 2025, “A clear distinction and presence of Acropora aff. divaricata within Acropora cf. solitaryensis species complex along their biogeographic distribution in East Asia”, SCIENTIFIC REPORTS, 25, 9739-9739. (SCIE) (IF: 3.8; SCI ranking: 29.2%)
6. Masumi Kamata, Yuko F Kitano, Akira Iguchi, Yoko Nozawa, Satoshi Nagai, Chaolun Allen Chen, Naohisa Wada, Sen-Lin Tang, Takehisa Yamakita, Hiroki Taninaka, Nina Yasuda*, 2025, “Genetic divergence of Pocillopora damicornis between temperate and subtropical regions: the need to monitor hidden genetic lineage distribution with regard to migration-load risks under climate change”, BULLETIN OF MARINE SCIENCE, 101(1), 91-104. (SCIE) (IF: 1.5; SCI ranking: 53.7%,69.4%)
7. Li Keat Lee*, Ya Yi Huang, Chaolun Allen Chen, Mei Lin Neo, Kieng Soon Hii, Haifeng Gu, Po Teen Lim & Chui Pin Leaw*, 2024, “Genetic patchiness of the endangered giant clam Tridacna maxima from Peninsular Malaysia”, CORAL REEFS, (2024), (2024)-(2024). (SCIE) (IF: 2.7; SCI ranking: 15.7%)
8. Tsung-Han Liu, Ming-Shiou Jeng, Chan-Yuan David Lee, Chih-Wei Tu, Po- Hsiung Lin, Chaolun Allen Chen, Chia-Ying Ko*, 2024, “Natural shading is helpful but not sufficient for mitigating warming in green sea turtle nests in the tropical South China Sea”, BIOLOGICAL CONSERVATION, 299(2024), 110807-110807. (SCIE) (IF: 4.9; SCI ranking: 10.9%,14%,24.4%)
9. Carolin Nieder, Siobhan Jean Heatwole, Chen-Pan Liao, Chen-Lu Lee, Chaolun Allen Chen, Shao-Lun Liu*, 2024, “Testing sea urchin and green sea turtle consumption of the allelopathic macroalga Galaxaura divaricata”(90), ECOLOGY AND EVOLUTION, 14(4), 14:e11324-14:e11324. (SCIE) (IF: 2.3; SCI ranking: 48.5%,51.9%)
10. Li Keat Lee, Mei Lin Neo, Kieng Soon Hii, Haifeng Gu, Chaolun Allen Chen, Po Teen Lim, Chui Pin Leaw*, 2024, “Vanishing giants: An assessment on the population status of giant clams across Malaysia”, REGIONAL STUDIES IN MARINE SCIENCE, 74(2024):103546, 74(2024):103546-74(2024):103546. (SCIE) (IF: 2.1; SCI ranking: 55.6%,30.6%)
11. Ya-Yi Huang, Ting-Ru Chen, Kim Phuong Lai, Chao-Yang Kuo, Ming-Jay Ho, Hernyi Justin Hsieh, Yi-Chia Hsin*, Chaolun Allen Chen*, 2024, “Poleward migration of tropical corals inhibited by future trends of seawater temperature and calcium carbonate (CaCO3) saturation”, Science of The Total Environment, 929, 172562-172562. (SCIE) (IF: 8.2; SCI ranking: 10.2%)
12. Chao-Yang Kuo, Chun-Yen Lin, Ming-Jay Ho & Chaolun Allen Chen*, 2023, “New depth record for oval squid, Sepioteuthis lessoniana, egg capsules in a mesophotic coral ecosystem natural habitat”, MARINE BIODIVERSITY, 53, 68-68. (SCIE) (IF: 1.5; SCI ranking: 56.3%,53.7%)
13. Lauriane Ribas-Deulofeu, Mathilde Loubeyres, Vianney Denis*, Stéphane De Palmas, Sung-Jin Hwang, Seonock Woo, Jun-Im Song & Chaolun Allen Chen*, 2023, “Jeju Island: a sentinel for tracking ocean warming impacts on high-latitude benthic communities”, CORAL REEFS, 42, 1097-1112. (SCIE) (IF: 2.7; SCI ranking: 15.7%)
14. Crystal J. McRae​, Shashank Keshavmurthy, Hung-Kai Chen, Zong-Min Ye, Pei-Jie Meng, Sabrina L. Rosset, Wen-Bin Huang, Chaolun Allen Chen, Tung-Yung Fan​, Isabelle M. Côté, 2023, “Baseline dynamics of Symbiodiniaceae genera and photochemical efficiency in corals from reefs with different thermal histories”, PEERJ, 11:e15421, 11:e15421-11:e15421. (SCIE) (IF: 2.3; SCI ranking: 50%)
15. Chao-Yang Kuo, Chen-Han Tsai, Ya-Yi Huang, Wei Khang Heng, An-Tzi Hsiao, Hernyi Justin Hsieh and Chaolun Allen Chen*, 2022, “Fine intervals are required when using point intercept transects to assess coral reef status”, FRONTIERS IN MARINE SCIENCE, 9:795512, 9:795512-9:795512. (SCIE) (IF: 2.8; SCI ranking: 12%)
16. Shashank Keshavmurthy, Ting-Ru Chen, Pei-Jen Liu, Jih-Terng Wang, Chaolun Allen Chen*, 2022, “Learning from the past is not enough to survive present and future bleaching threshold temperatures”, SCIENCE OF THE TOTAL ENVIRONMENT, 852(2022) 158379. (SCIE) (IF: 8.2; SCI ranking: 10.2%)
17. Crystal J. McRae, Shashank Keshavmurthy, Pei-Jie Meng, Sabrina L. Rosset, Wen-Bin Huang, Chaolun Allen Chen, Tung-Yung Fan* & Isabelle M. Côté, 2022, “Variable responses to chronic and acute elevated temperature of three coral species from reefs with distinct thermal regimes”, Marine Biology, 169(97), 169(97)-169(97). (SCIE) (IF: 2.1; SCI ranking: 30.6%)
18. Savanna Wenhua Chow, Shashank Keshavmurthy, James Davis Reimer, Nicole de Voogd, Hui Huang, Jih-Terng Wang, Sen-Lin Tang, Peter J. Schupp, Chun Hong Tan, Hock-Chark Liew, Keryea Soong, Beginer Subhan, Hawis Madduppa* and Chaolun Allen Chen*, 2022, “Population genetics and demography of the coral-killing cyanobacteriosponge, Terpios hoshinota, in the Indo-West Pacific”, PeerJ, 10:e13451, 10:e13451-10:e13451. (SCIE) (IF: 2.3; SCI ranking: 50%)
19. Nathan William Price, Kao-Sung Chen, Chaolun Allen Chen & Colin Kuo-Chang Wen*, 2022, “Scraping and grazing herbivorous/detritivorous fish display opposite feeding behaviours under different protection regulations”, Marine Biology Research, 17, 9-10. (SCIE) (IF: 1; SCI ranking: 85.4%,73.1%)
20. Yu-Hsiang Chen, Hsing-Ju Chen, Cheng-Yu Yang, Jia-Ho Shiu, Daphne Z. Hoh, Pei-Wen Chiang, Wenhua Savanna Chow, Chaolun Allen Chen, Tin-Han Shih, Szu-Hsien Lin, Chi-Ming Yang, James Davis Reimer, Euichi Hirose, Budhi Hascaryo Iskandar, Hui Huang, Peter J. Schupp, Chun Hong James Tan, Hideyuki Yamashiro, Ming-Hui Liao, Sen-Lin Tang*, 2022, “Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral-killing sponge, Terpios hoshinota”, ENVIRONMENTAL MICROBIOLOGY, 24(3), 1308-1325. (SCIE) (IF: 4.3; SCI ranking: 29.1%)
21. Jih-Terng Wang*, Yi-Ting Wang, Chaolun Allen Chen, Pei-Jei Meng, Kwee Siong Tew, Pei-Wen Chiang, Sen-Lin Tang*, 2022, “Extra high superoxide dismutase in host tissue is associated with improving bleaching resistance in “thermal adapted” and Durusdinium trenchii-associating coral”, PeerJ, 10:e12746, 10:e12746-10:e12746. (SCIE) (IF: 2.3; SCI ranking: 50%)
22. Mu-Han Chen, Ya-Yi Huang*, Bi-Ying Huang, Hernyi Justin Hsieh, Jen Nie Lee, Mei Lin Neo, Hironobu Fukami, Chaolun Allen Chen*, 2022, “Historical Connectivity and Demography of the Ferocious Reef Crab, Eriphia ferox (Crustacea; Eriphiidae), Demonstrate That Taoyuan Algal Reef Is an Essential Population Source Along the East Taiwan Strait”, Frontiers in Marine Science, 8:799989, 8:799989-8:799989. (SCIE) (IF: 2.8; SCI ranking: 12%)
23. Heng WK, Ho M-J, Kuo C-Y, Huang Y-Y, Ko C-Y, Jeng M-S, Chen CA*, 2022, “Crown-of-thorns starfish outbreak at Taiping Island (Itu Aba), Spratlys, South China Sea”, Bulletin of Marine Science, 98(1), 101-102. (SCIE) (IF: 1.5; SCI ranking: 53.7%,69.4%)
24. Chao-Yang Kuo, Ming-Jay Ho, Wei Khang Heng, Ya-Yi Huang, Chia-Ying Ko, Guo-Chen Jiang, Ming-Shiou Jeng* & Chaolun Allen Chen*, 2021, “What is for dessert? Crown-of-thorns starfish feeds on non-scleractinian anthozoans at Taiping Island (Itu Aba), Spratlys, South China Sea”, Marine Biodiversity, 52, 2 (2022), 52, 2 (2022)-52, 2 (2022). (SCIE) (IF: 1.5; SCI ranking: 56.3%,53.7%)
25. Derek Soto*, Stéphane De Palmas*, Ming-Jay Ho*, Vianney Denis*, Chaolun Allen Chen*, 2021, “A molecular census of early-life stage scleractinian corals in shallow and mesophotic zones”, Ecology and Evolution, 11(21), 14573-14584. (SCIE) (IF: 2.3; SCI ranking: 48.5%,51.9%)
26. Stéphane de Palmas, Derek Soto, Ming-Jay Ho, Vianney Denis* , Chaolun Allen Chen*, 2021, “Strong horizontal and vertical connectivity in the coral Pocillopora verrucosa from Ludao, Taiwan, a small oceanic island”, PLOS ONE, 16(10): e0258181. (SCIE) (IF: 2.9; SCI ranking: 37.5%)
27. Stéphane De Palmas, Vianney Denis*, Derek Soto, Yuting Vicky Lin, Ming-Jay Ho & Chaolun Allen Chen*, 2021, “Scleractinian diversity in the upper mesophotic zone of Ludao (Taiwan): a museum collection with new records from Taiwanese waters”, Marine Biodiversity, 51, 80. (SCIE) (IF: 1.5; SCI ranking: 56.3%,53.7%)
28. Lauriane Ribas-Deulofeu, Pierre-Alexandre Château, Vianney Denis and Chaolun Allen Chen*, 2021, “Portraying Gradients of Structural Complexity in Coral Reefs Using Fine-Scale Depth Profiles”, Frontiers in Marine Science, 8:675853, 8:675853-8:675853. (SCIE) (IF: 2.8; SCI ranking: 12%)
29. Lauriane Ribas-Deulofeu, Vianney Denis, Pierre-Alexandre Château, Chaolun Allen Chen​*, 2021, “Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan)”, PEERJ, 9, e11744. (SCIE) (IF: 2.3; SCI ranking: 50%)
30. Parisa Alidoost Salimi, Pargol Ghavam Mostafavi, Chaolun Allen Chen, Michel Pichon & Mahsa Alidoost Salimi, 2021, “Molecular phylogeny of some coral species from the Persian Gulf”, MOLECULAR BIOLOGY REPORTS, 48, 2993-2999. (SCIE) (IF: 2.6; SCI ranking: 66.3%)
31. Ashley H Y Bang, Chao-Yang Kuo, Colin Kuo-Chang Wen, Khah-Leng Cherh, Ming-Jay Ho, Nien-Yun Cheng, Yen-Chia Chen and Chaolun Allen Chen*, 2021, “Corrigendum: Quantifying Coral Reef Resilience to Climate Change and Human Development: An Evaluation of Multiple Empirical Frameworks”, Frontiers in Marine Science-Coral Reef Research, 8:653404, 653404.

專書(論文集)之一章

1. Chao-Yang Kuo, Shashank Keshavmurthy, Ya-Yi Huang, Ming-Jay Ho, Hernyi Justin Hsieh, An-Tzi Hsiao, Wei-Cheng Lo, Yi-Chia Hsin & Chaolun Allen Chen*, 2023, “Transitional Coral Ecosystem of Taiwan in the Era of Changing Climate”, editor(s): Ichiro Takeuchi, Hideyuki Yamashiro, Coral Reefs of Eastern Asia under Anthropogenic Impacts, pp. 7-35, Springer Nature Switzerland AG 2: Springer Cham.
2. Shashank Keshavmurthy, Takuma Mezaki, James Davis Reimer, Kwang-Sik Choi & Chaolun Allen Chen, 2023, “Succession and Emergence of Corals in High-Latitude (Temperate) Areas of Eastern Asia into the Future”, editor(s): Ichiro Takeuchi, Hideyuki Yamashiro, Coral Reefs of Eastern Asia under Anthropogenic Impacts, pp. 53-71, Springer Nature Switzerland AG 2: Springer Cham.